Papers Aloud

Papers Aloud

by Arkadiy Garber
EducationEarth SciencesLife Sciences
Season 1
#43 - Mutation Spectrum Variation - Jiang et al., 2021 - eLife
Title: A modified fluctuation assay reveals a natural mutator phenotype that drives mutation spectrum variation within Saccharomyces cerevisiae Authors: Pengyao Jiang, Anja R Ollodart, Vidha Sudhesh, Alan J Herr, Maitreya J Dunham, Kelley Harris Citation: Jiang, P., Ollodart, A. R., Sudhesh, V., Herr, A. J., Dunham, M. J., & Harris, K. (2021). A modified fluctuation assay reveals a natural mutator phenotype that drives mutation spectrum variation within Saccharomyces cerevisiae. eLife, 10. https://doi.org/10.7554/eLife.68285. Link to article
S1 · E43
Feb 6, 2023
26:50
#42 - Evolution in Energy Limited Microorganisms - Shoemaker et al., 2021 - MBE
Title: Molecular Evolutionary Dynamics of Energy Limited Microorganisms Authors: William R. Shoemaker, Evgeniya Polezhaeva, Kenzie B. Givens, and Jay T. Lennon Citation: Shoemaker, W. R., Polezhaeva, E., Givens, K. B., & Lennon, J. T. (2021). Molecular Evolutionary Dynamics of Energy Limited Microorganisms. Molecular Biology and Evolution, 38(10), 4532–4545. Link to article
S1 · E42
Feb 3, 2023
12:14
#41 - Diversity of Shine-Dalgarno Sequences - Wen et al., 2021 - RNA Biology
Title: The diversity of Shine-Dalgarno sequences sheds light on the evolution of translation initiation Authors: Jin-Der Wen, Syue-Ting Kuo, and Hsin-Hung David Chou. Citation: Wen, J.-D., Kuo, S.-T., & Chou, H.-H. D. (2021). The diversity of Shine-Dalgarno sequences sheds light on the evolution of translation initiation. RNA Biology, 18(11), 1489–1500. Link to article
S1 · E41
Jan 26, 2023
47:46
#40 - Incipient genome erosion and metabolic streamlining for antibiotic production in a defensive symbiont - Nechitaylo et al., 2022 - PNAS
Title: Incipient genome erosion and metabolic streamlining for antibiotic production in a defensive symbiont Authors: Taras Y. Nechitaylo, Mario Sandoval-Calderónb\, Tobias Engl, Natalie Wielsch, Diane M. Dunne, Alexander Goesmann, Erhard Strohm, Aleš Svatoš, Colin Dale, Robert B. Weiss, and Martin Kaltenpoth Citation: Nechitaylo, T. Y., Sandoval-Calderón, M., Engl, T., Wielsch, N., Dunn, D. M., Goesmann, A., Strohm, E., Svatoš, A., Dale, C., Weiss, R. B., & Kaltenpoth, M. (2021). Incipient genome erosion and metabolic streamlining for antibiotic production in a defensive symbiont. Proceedings of the National Academy of Sciences of the United States of America, 118(17). https://doi.org/10.1073/pnas.2023047118 Link to article defensive symbiosis|protective mutualism|genome erosion|pseudogenization|Streptomyces
S1 · E40
Sep 23, 2022
33:43
#39 - Pervasive translation in Mycobacterium tuberculosis - Smith et al., 2022 - eLife
Title: Pervasive translation in Mycobacterium tuberculosis Authors: Carol Smith, Jill G Canestrari, Archer J Wang, Matthew M Champion, Keith M Derbyshire, Todd A Gray, Joseph T Wade. Citation: Smith, C., Canestrari, J. G., Wang, A. J., Champion, M. M., Derbyshire, K. M., Gray, T. A., & Wade, J. T. (2022). Pervasive translation in Mycobacterium tuberculosis. eLife, 11. https://doi.org/10.7554/eLife.73980 Link to article
S1 · E39
Jun 5, 2022
21:36
#38 - Are aliens among us - Davies, 2006 - Scientific American
Title: Are Aliens among Us Authors: Paul Davies Citation: Davies, P. (2007). Are Aliens among Us? Scientific American, 297(6), 62–69. Link to article
S1 · E38
Oct 10, 2021
27:15
#37 - Environmental stress and genome streamlining - Simonsen, 2021 - ISME
Title: Environmental stress leads to genome streamlining in a widely distributed species of soil bacteria Authors: Anna K. Simonsen Citation: Simonsen, A. K. (2021). Environmental stress leads to genome streamlining in a widely distributed species of soil bacteria. The ISME Journal. https://doi.org/10.1038/s41396-021-01082-x Link to article
S1 · E37
Oct 10, 2021
18:34
# 36 - Principles of Geobiochemistry - Shock and Boyd, 2015 - Elements
Title: Principles of Geobiochemistry Authors: Everett L. Shock and Eric S. Boyd Citation: Shock, E. L., & Boyd, E. S. (2015). Principles of Geobiochemistry. Elements , 11(6), 395–401. Link to article
S1 · E36
Sep 23, 2021
40:33
#35 - The imitation game - Cronin et al., 2006 - Nature Biotechnology
Title: The imitation game—a computational chemical approach to recognizing life Authors: Leroy Cronin, Natalio Krasnogor, Benjamin G Davis, Cameron Alexander, Neil Robertson, Joachim H G Steinke, Sven L M Schroeder, Andrei N Khlobystov, Geoff Cooper, Paul M Gardner, Peter Siepmann, Benjamin J Whitaker & Dan Marsh Citation: Cronin, L., Krasnogor, N., Davis, B. G., Alexander, C., Robertson, N., Steinke, J. H. G., Schroeder, S. L. M., Khlobystov, A. N., Cooper, G., Gardner, P. M., Siepmann, P., Whitaker, B. J., & Marsh, D. (2006). The imitation game--a computational chemical approach to recognizing life. Nature Biotechnology, 24(10), 1203–1206. Link to article
S1 · E35
Sep 23, 2021
17:19
#34 - Genome Evolution in Million-Year-Old Bacteria - Orsi et al., 2021 - mBio
Title: Genome Evolution in Bacteria Isolated from Million-Year-Old Subseafloor Sediment Authors: William D. Orsi, Tobias Magritsch, Sergio Vargas, Ömer K. Coskun, Aurele Vuillemin, Sebastian Höhna, Gert Wörheide, Steven D’Hondt, B. Jesse Shapiro, Paul Carini Citation: Orsi, W. D., Magritsch, T., Vargas, S., Coskun, Ö. K., Vuillemin, A., Höhna, S., Wörheide, G., D’Hondt, S., Shapiro, B. J., & Carini, P. (2021). Genome Evolution in Bacteria Isolated from Million-Year-Old Subseafloor Sediment. mBio, 12(4), e0115021. Link to article
S1 · E34
Sep 8, 2021
29:51
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